| Genomics |
| Cancer Bioinformatics Services, UPMC Hillman Cancer Center | Riyue Bao or Uma Chandran |
| The Cancer Bioinformatics Services at UPMC Hillman Cancer Center provides bioinformatics support for translational genomics using sequencing, arrays, single cell, and other technologies. Location: Shadyside, HCC |
| Cancer Genomics Facility, UPMC Hillman Cancer Center | Maureen Lyons |
| The Cancer Genomics Facility at UPMC Hillman Cancer Center supports genomics and transcriptomics platforms including nucleic acid extraction, sample QC, next-generation library preparation and sequencing, single cell and spatial analysis. The facility specializes in paraffin-embedded tissue samples.
Location: Shadyside, SHDY Location: Shadyside, SHDY |
| Cytometry Facility, UPMC Hillman Cancer Center | E. Michael Meyer |
| The Cytometry Facility at UPMC Hillman Cancer Center supports analytical cytometry and cell sorting. The facility also offers NanoString Digital Spatial Analyzer and nCounter service and support. Location: Shadyside, FORD |
| Genomics Analysis Core | Uma Chandran |
| The Genomics Analysis Core focuses on bioinformatics analysis of genomic data with emphasis on rigor and reproducibility. Professional analytical staff support all aspects of translational studies - from experimental design to data analysis to publication. Location: Shadyside, BAUM |
| Health Sciences Sequencing Core at Children's Hospital of Pittsburgh | Dr. Will MacDonald |
| The Health Sciences Sequencing Core (HSSC) at UPMC Children's Hospital of Pittsburgh offers full-service next generation sequencing; including RNA/DNA extraction, library generation and sequencing on Illumina NextSeq 2 or MiSeq sequencers. Protocols are established to accept a wide range of input quantity and quality. The HSSC also specializes in spatial transcriptomics and offers full-service options for 1x Genomics Visium, VisiumHD and Xenium, and Curio Biosciences Slide Seeker (Slide-seq) Location: Lawrenceville, RANCH |
| High Throughput Genome Center | Jianhua Luo, MD |
| The High Throughput Genome Center supports high throughput paralleled sequencing for genome, transcriptome and epigenome analyses through Illumina and Oxford nanopore platforms, and array through Affymetrix platform. In addition, the center provides collaboration on single-cell transcriptome and multi-omic sequencing. For spatial biology, we provide Cytassist and Stereo-Seq platforms for transcriptome analysis. The center also provides extensive bioinformatic analyses to investigators through collaboration. Location: Oakland, SCAIF |
| High Throughput Genomics Core | Web Form |
| The High Throughput Genomics Core (HTGC) for clinical and translational medicine offers Illumina genome and exome sequencing using a semiautomated CAP compliant platform. Location: Shadyside, 5560 Centre Ave. |
| Metabolomics |
| Cancer Bioinformatics Services, UPMC Hillman Cancer Center | Riyue Bao or Uma Chandran |
| The Cancer Bioinformatics Services at UPMC Hillman Cancer Center provides bioinformatics support for translational genomics using sequencing, arrays, single cell, and other technologies. Location: Shadyside, HCC |
| Genomics Analysis Core | Uma Chandran |
| The Genomics Analysis Core focuses on bioinformatics analysis of genomic data with emphasis on rigor and reproducibility. Professional analytical staff support all aspects of translational studies - from experimental design to data analysis to publication. Location: Shadyside, BAUM |
| Health Sciences Mass Spectrometry Core | General email |
| The Health Sciences Mass Spectrometry Core provides liquid chromatography high resolution mass spectrometry (LC-HRMS) services for metabolomics, lipidomics and proteomics. We also provide proteomics analysis using the O-link midplex platform. Expert staff provide assistance throughout the full lifespan of all projects from experimental design and sample preparation through statistical analysis and interpretation of datasets. Location: Oakland, BST3 |
| OMICS Data Analysis |
| Bioinformatics Core Facility at the John G Rangos Sr. Research Center | Dhivyaa Rajasundaram |
| The Bioinformatics Core Facility at the John G. Rangos Sr. Research Center provides bioinformatics as well as biostatistics services across a wide range of disease domains. The next-generation sequencing data analysis includes, but is not limited to, whole genome-, whole exome-, bulk and single cell epigenome-, bulk and single cell transcriptome, spatial transcriptome, microbiome, metabolome, proteome and lipidome data analysis. The facility specializes in T-, and B- cell repertoire data analysis, multi-omics initiatives, and multimodal analysis. Shiny dashboard and other web application development is also supported. Location: Lawrenceville, RANCH |
| Cancer Bioinformatics Services, UPMC Hillman Cancer Center | Riyue Bao or Uma Chandran |
| The Cancer Bioinformatics Services at UPMC Hillman Cancer Center provides bioinformatics support for translational genomics using sequencing, arrays, single cell, and other technologies. Location: Shadyside, HCC |
| Genomics Analysis Core | Uma Chandran |
| The Genomics Analysis Core focuses on bioinformatics analysis of genomic data with emphasis on rigor and reproducibility. Professional analytical staff support all aspects of translational studies - from experimental design to data analysis to publication. Location: Shadyside, BAUM |
| Health Sciences Library System Molecular Biology Information Service | Ansuman Chattopadhya |
| The Health Sciences Library System Molecular Biology Information Service office maintains institutional licenses to a number of analytical software tools. Training workshops are offered regularly on how to use many of those packages, including those used for RNA-Seq and single-cell transcriptomics analysis. Location: Oakland, SCAIF |
| High Throughput Genome Center | Jianhua Luo, MD |
| The High Throughput Genome Center supports high throughput paralleled sequencing for genome, transcriptome and epigenome analyses through Illumina and Oxford nanopore platforms, and array through Affymetrix platform. In addition, the center provides collaboration on single-cell transcriptome and multi-omic sequencing. For spatial biology, we provide Cytassist and Stereo-Seq platforms for transcriptome analysis. The center also provides extensive bioinformatic analyses to investigators through collaboration. Location: Oakland, SCAIF |
| In Vivo Imaging Facility, UPMC Hillman Cancer Center (clinical research) | Rivka Colen |
| The UPMC Hillman Cancer Center In Vivo Imaging Facility provides novel quantitative imaging assessments and metrics that include but not limited to standard FDA-approved clinical trial imaging assessments (such as RECIST, iRECIST, irRECIST, iiRC, RANO, Lugano, etc) to evaluate cancer therapy and more advanced AI imaging assessments using radiomics, radiogenomics, and AI-driven imaging biomarkers to enhance diagnostic, monitoring and post-therapy predictions and assessments. Location: Shadyside, SHDY |
| Single Cell Core | Web Form |
| The Single Cell Core provides library preparation and analysis using the 1X Genomics Chromium platform. All 1X Genomics single cell applications are fully supported including gene expression, V(D)J B cell and T cell immune profiling, ATAC, Multiome (gene expression with ATAC), cell surface protein markers and FLEX (single cell processing of FFPE tissue sections and formaldehyde fixed cells and tissues). The Single Cell Core can also work with researchers to pilot other single cell technologies. Location: Oakland, BSTWR-S |
| Proteomics |
| Cancer Bioinformatics Services, UPMC Hillman Cancer Center | Riyue Bao or Uma Chandran |
| The Cancer Bioinformatics Services at UPMC Hillman Cancer Center provides bioinformatics support for translational genomics using sequencing, arrays, single cell, and other technologies. Location: Shadyside, HCC |
| Cytometry Facility, UPMC Hillman Cancer Center | E. Michael Meyer |
| The Cytometry Facility at UPMC Hillman Cancer Center supports analytical cytometry and cell sorting. The facility also offers NanoString Digital Spatial Analyzer and nCounter service and support. Location: Shadyside, FORD |
| Genomics Analysis Core | Uma Chandran |
| The Genomics Analysis Core focuses on bioinformatics analysis of genomic data with emphasis on rigor and reproducibility. Professional analytical staff support all aspects of translational studies - from experimental design to data analysis to publication. Location: Shadyside, BAUM |
| Health Sciences Mass Spectrometry Core | General email |
| The Health Sciences Mass Spectrometry Core provides liquid chromatography high resolution mass spectrometry (LC-HRMS) services for metabolomics, lipidomics and proteomics. We also provide proteomics analysis using the O-link midplex platform. Expert staff provide assistance throughout the full lifespan of all projects from experimental design and sample preparation through statistical analysis and interpretation of datasets. Location: Oakland, BST3 |
| Single Cell Core | Web Form |
| The Single Cell Core provides library preparation and analysis using the 1X Genomics Chromium platform. All 1X Genomics single cell applications are fully supported including gene expression, V(D)J B cell and T cell immune profiling, ATAC, Multiome (gene expression with ATAC), cell surface protein markers and FLEX (single cell processing of FFPE tissue sections and formaldehyde fixed cells and tissues). The Single Cell Core can also work with researchers to pilot other single cell technologies. Location: Oakland, BSTWR-S |
| Spatial Biology |
| Cancer Bioinformatics Services, UPMC Hillman Cancer Center | Riyue Bao or Uma Chandran |
| The Cancer Bioinformatics Services at UPMC Hillman Cancer Center provides bioinformatics support for translational genomics using sequencing, arrays, single cell, and other technologies. Location: Shadyside, HCC |
| Cancer Genomics Facility, UPMC Hillman Cancer Center | Maureen Lyons |
| The Cancer Genomics Facility at UPMC Hillman Cancer Center supports genomics and transcriptomics platforms including nucleic acid extraction, sample QC, next-generation library preparation and sequencing, single cell and spatial analysis. The facility specializes in paraffin-embedded tissue samples.
Location: Shadyside, SHDY Location: Shadyside, SHDY |
| Cytometry Facility, UPMC Hillman Cancer Center | E. Michael Meyer |
| The Cytometry Facility at UPMC Hillman Cancer Center supports analytical cytometry and cell sorting. The facility also offers NanoString Digital Spatial Analyzer and nCounter service and support. Location: Shadyside, FORD |
| Genomics Analysis Core | Uma Chandran |
| The Genomics Analysis Core focuses on bioinformatics analysis of genomic data with emphasis on rigor and reproducibility. Professional analytical staff support all aspects of translational studies - from experimental design to data analysis to publication. Location: Shadyside, BAUM |
| Health Sciences Sequencing Core at Children's Hospital of Pittsburgh | Dr. Will MacDonald |
| The Health Sciences Sequencing Core (HSSC) at UPMC Children's Hospital of Pittsburgh offers full-service next generation sequencing; including RNA/DNA extraction, library generation and sequencing on Illumina NextSeq 2 or MiSeq sequencers. Protocols are established to accept a wide range of input quantity and quality. The HSSC also specializes in spatial transcriptomics and offers full-service options for 1x Genomics Visium, VisiumHD and Xenium, and Curio Biosciences Slide Seeker (Slide-seq) Location: Lawrenceville, RANCH |
| High Throughput Genome Center | Jianhua Luo, MD |
| The High Throughput Genome Center supports high throughput paralleled sequencing for genome, transcriptome and epigenome analyses through Illumina and Oxford nanopore platforms, and array through Affymetrix platform. In addition, the center provides collaboration on single-cell transcriptome and multi-omic sequencing. For spatial biology, we provide Cytassist and Stereo-Seq platforms for transcriptome analysis. The center also provides extensive bioinformatic analyses to investigators through collaboration. Location: Oakland, SCAIF |
